Package index • Sibyl

Functions

Accumulation curves

Testing sample completeness

accumulation_test(): Accumulation curve analysis

Repeated rarefaction

Performing either single or multiple instances of repeated rarefaction.

repeated_rarefaction(): Perform repeated rarefaction
test_threshold(): Test different rarefaction thresholds

Dirichlet Monte Carlo ordination

Quantifying compositional uncertainty via Monte Carlo sampling from the Dirichlet posterior, as an alternative to repeated rarefaction.

dirichlet_ordination(): Perform Dirichlet Monte Carlo ordination

Plotting

Accessory plotting functions

avg_pairwise_dist_plot(): Plot average pairwise distance across thresholds

Data

Available datasets

adults: adults
larvae: larvae